JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGA_chr15_41655405_41774940	0/0	t0015	2852	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0016	2852	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0017	2852	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0018	2852	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0019	2850	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0020	2852	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0021	2852	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	t0022	2852	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGLL_chr3_127684066_127827515	0/1	t0001	3331	124	20	13	73	4	13	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0002	3329	89	18	14	43	4	10	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0003	3329	21	19	2	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0004	3332	13	5	3	4	0	1	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0005	3328	13	0	5	1	2	5	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	1/0	t0006	3330	12	1	3	5	0	2	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0007	3330	5	3	0	2	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0008	3328	5	5	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0009	3330	4	4	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0010	3329	3	2	1	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0011	3331	2	0	0	2	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0012	3331	2	2	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0013	3330	2	2	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0014	3332	1	0	0	1	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0015	3332	1	0	0	1	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0016	3331	1	1	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0017	3331	1	0	0	1	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0018	3331	1	0	0	1	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0019	3329	1	0	0	0	0	1	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0020	3329	1	1	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0021	3329	1	0	0	0	0	1	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0022	3328	1	0	1	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0023	3328	1	1	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0024	3331	1	1	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0025	3330	1	1	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0026	3330	1	1	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0027	3329	1	1	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0028	3329	1	0	0	0	0	1	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0029	3329	1	0	0	0	0	1	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0030	3329	1	0	0	0	0	1	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0031	3331	1	1	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	t0032	3329	1	1	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGME1_chr20_17964018_17996122	0/0	t0001	1197	59	27	15	15	0	2	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0002	1200	53	4	4	33	4	8	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0003	1201	46	2	9	26	2	7	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0004	1199	43	9	10	18	3	3	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0005	1198	33	15	1	16	0	1	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0006	1197	30	0	3	25	1	1	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0007	1202	27	3	9	8	1	6	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0008	1198	21	0	4	17	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	1/0	t0009	1197	21	4	9	1	3	3	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0010	1203	21	1	3	12	3	2	copy fasta	MGME1	chr20	17964018	17996122