JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGME1_chr20_17964018_17996122	0/0	t0011	1198	13	3	5	1	1	3	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0012	1197	10	10	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/1	t0013	1197	4	0	0	1	0	2	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0014	1200	3	3	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0015	1198	2	2	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0016	1207	2	0	0	0	0	2	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0017	1197	2	2	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0018	1202	1	1	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0019	1198	1	0	0	0	0	1	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0020	1199	1	0	0	1	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0021	1199	1	0	0	0	0	1	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0022	1197	1	0	0	1	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0023	1197	1	1	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0024	1201	1	1	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0025	1197	1	0	0	1	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0026	1198	1	1	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0027	1198	1	1	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0028	1202	1	1	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	t0029	1201	1	1	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGMT_chr10_129462241_129775983	0/0	t0001	4056	33	8	6	12	2	5	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/1	t0002	4056	32	5	11	11	1	3	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0003	4056	28	10	4	12	0	2	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0004	4056	17	4	7	1	0	5	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0005	4056	7	0	4	3	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	1/0	t0006	4055	7	1	3	0	0	2	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0007	4054	5	5	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0008	4054	5	5	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0009	4056	5	5	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0010	4056	5	0	1	0	3	1	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0011	4054	4	4	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0012	4056	4	0	0	4	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0013	4056	4	4	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0014	4056	4	1	3	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0015	4056	3	3	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0016	4054	2	2	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0017	4056	2	2	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0018	4056	2	2	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0019	4056	2	0	1	0	1	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0020	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0021	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0022	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0023	4056	1	0	0	1	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0024	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0025	4056	1	0	0	1	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0026	4056	1	0	0	1	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0027	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0028	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0029	4056	1	0	0	0	1	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0030	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0031	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983