JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGMT_chr10_129462241_129775983	0/0	t0032	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0033	4056	1	0	0	1	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0034	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0035	4056	1	0	0	1	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0036	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0037	4056	1	0	1	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0038	4055	1	0	1	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0039	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0040	4056	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0041	4056	1	0	0	0	0	1	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	t0042	4056	1	0	0	0	0	1	copy fasta	MGMT	chr10	129462241	129775983
MGP_chr12_14875864_14890854	0/1	t0001	1339	248	37	38	141	5	26	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0002	1339	76	18	20	25	5	8	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0003	1339	27	10	7	4	2	4	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0004	1339	12	0	0	8	0	4	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0005	1339	7	7	0	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0006	1339	7	7	0	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0007	1339	6	5	1	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0008	1339	5	0	4	0	0	1	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0009	1339	3	3	0	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0010	1339	2	0	0	2	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0011	1339	1	0	0	0	0	1	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	1/0	t0012	1339	1	0	0	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0013	1339	1	1	0	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0014	1339	1	1	0	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	t0015	1339	1	1	0	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGRN1_chr16_4619826_4695972	0/0	t0001	2199	86	5	22	43	6	10	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0002	2200	66	8	13	35	1	9	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	1/0	t0003	2200	32	14	2	10	2	3	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0004	2199	15	4	4	6	1	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0005	2199	14	14	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0006	2200	14	2	2	6	2	2	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0007	2200	10	1	3	6	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0008	2200	8	8	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0009	2200	8	8	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0010	2199	6	0	0	6	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0011	2199	6	1	1	3	0	1	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0012	2198	5	0	2	2	0	1	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0013	2200	5	0	0	0	1	4	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0014	2200	4	3	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0015	2199	4	0	1	0	0	3	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0016	2200	2	0	0	0	1	1	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0017	2199	2	0	0	2	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0018	2200	2	0	2	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0019	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0020	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0021	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0022	2200	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0023	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0024	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972