JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGRN1_chr16_4619826_4695972	0/0	t0025	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0026	2198	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0027	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0028	2199	1	0	0	0	0	1	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0029	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0030	2200	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0031	2200	1	0	0	0	1	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0032	2200	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0033	2200	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0034	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0035	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0036	2200	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0037	2200	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0038	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0039	2200	1	0	1	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0040	2198	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0041	2198	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0042	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0043	2199	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0044	2199	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0045	2199	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0046	2199	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0047	2199	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0048	2198	1	0	0	0	1	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0049	2199	1	0	0	0	0	1	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0050	2200	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0051	2200	1	0	1	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0052	2200	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0053	2200	1	0	1	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/1	t0054	2200	1	0	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0055	2200	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0056	2200	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0057	2200	1	0	0	0	0	1	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0058	2200	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0059	2200	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0060	2200	1	0	1	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0061	2200	1	0	0	0	0	1	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0062	2200	1	0	0	0	0	1	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	t0063	2200	1	0	0	0	0	1	copy fasta	MGRN1	chr16	4619826	4695972
MGST1_chr12_16342645_16369410	1/1	t0001	458	271	59	56	94	17	43	copy fasta	MGST1	chr12	16342645	16369410
MGST1_chr12_16342645_16369410	0/0	t0002	458	107	32	11	61	0	3	copy fasta	MGST1	chr12	16342645	16369410
MGST1_chr12_16342645_16369410	0/0	t0003	458	76	0	9	64	1	2	copy fasta	MGST1	chr12	16342645	16369410
MGST1_chr12_16342645_16369410	0/0	t0004	458	4	0	0	4	0	0	copy fasta	MGST1	chr12	16342645	16369410
MGST1_chr12_16342645_16369410	0/0	t0005	458	1	1	0	0	0	0	copy fasta	MGST1	chr12	16342645	16369410
MGST1_chr12_16342645_16369410	0/0	t0006	458	1	0	0	1	0	0	copy fasta	MGST1	chr12	16342645	16369410
MGST1_chr12_16342645_16369410	0/0	t0007	458	1	1	0	0	0	0	copy fasta	MGST1	chr12	16342645	16369410
MGST1_chr12_16342645_16369410	0/0	t0008	458	1	1	0	0	0	0	copy fasta	MGST1	chr12	16342645	16369410
MGST2_chr4_139660819_139709243	0/1	t0001	297	340	63	74	153	16	33	copy fasta	MGST2	chr4	139660819	139709243
MGST2_chr4_139660819_139709243	0/0	t0002	297	92	25	7	51	0	9	copy fasta	MGST2	chr4	139660819	139709243
MGST2_chr4_139660819_139709243	0/0	t0003	297	4	3	1	0	0	0	copy fasta	MGST2	chr4	139660819	139709243