JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MGST2_chr4_139660819_139709243	0/0	t0004	297	2	0	0	0	0	2	copy fasta	MGST2	chr4	139660819	139709243
MGST2_chr4_139660819_139709243	1/0	t0005	297	1	0	0	0	0	0	copy fasta	MGST2	chr4	139660819	139709243
MGST2_chr4_139660819_139709243	0/0	t0006	297	1	1	0	0	0	0	copy fasta	MGST2	chr4	139660819	139709243
MGST3_chr1_165626234_165661136	0/0	t0001	700	166	29	32	86	3	16	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	1/1	t0002	700	89	50	21	2	5	9	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0003	700	68	2	23	22	7	14	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0004	700	6	6	0	0	0	0	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0005	700	3	1	0	0	1	1	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0006	700	2	2	0	0	0	0	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0007	700	2	0	0	0	2	0	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0008	700	2	2	0	0	0	0	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0009	700	2	2	0	0	0	0	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0010	700	1	1	0	0	0	0	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0011	700	1	0	0	1	0	0	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0012	700	1	1	0	0	0	0	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0013	700	1	0	0	1	0	0	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0014	700	1	1	0	0	0	0	copy fasta	MGST3	chr1	165626234	165661136
MGST3_chr1_165626234_165661136	0/0	t0015	700	1	1	0	0	0	0	copy fasta	MGST3	chr1	165626234	165661136
MIA2_chr14_39228915_39355694	1/1	t0001	631	194	34	48	78	14	18	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	t0002	631	173	59	22	70	2	20	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	t0003	631	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA3_chr1_222613097_222673007	0/1	t0001	2406	160	15	27	82	12	23	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0002	2410	99	14	21	55	1	8	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	1/0	t0003	2403	34	4	4	21	0	4	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0004	2407	24	16	2	3	1	2	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0005	2410	10	7	3	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0006	2410	10	10	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0007	2407	10	8	2	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0008	2407	6	6	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0009	2407	4	4	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0010	2403	2	2	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0011	2407	2	0	0	0	0	2	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0012	2410	2	2	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0013	2407	1	0	1	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0014	2403	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0015	2403	1	0	0	0	0	1	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0016	2406	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0017	2407	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0018	2403	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	t0019	2407	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA_chr19_40770521_40782490	0/1	t0001	93	316	67	54	142	13	39	copy fasta	MIA	chr19	40770521	40782490
MIA_chr19_40770521_40782490	1/0	t0002	93	87	23	6	51	3	3	copy fasta	MIA	chr19	40770521	40782490
MIA_chr19_40770521_40782490	0/0	t0003	93	1	0	0	1	0	0	copy fasta	MIA	chr19	40770521	40782490
MIB1_chr18_21735792_21875953	0/1	t0001	7092	80	8	25	33	1	12	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0002	7092	73	2	19	41	1	10	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0003	7092	19	8	6	3	0	2	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0004	7093	17	0	1	15	0	1	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0005	7092	17	15	1	1	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0006	7092	15	14	1	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0007	7092	14	0	0	14	0	0	copy fasta	MIB1	chr18	21735792	21875953