JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIB1_chr18_21735792_21875953	0/0	t0008	7093	6	6	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0009	7092	6	4	2	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0010	7092	5	4	1	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0011	7091	5	5	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0012	7092	4	0	0	4	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0013	7092	3	2	1	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0014	7080	3	3	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0015	7080	3	2	1	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0016	7093	2	2	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0017	7080	2	2	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0018	7092	2	2	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0019	7092	2	2	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0020	7092	2	0	1	0	1	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0021	7092	1	0	0	0	0	1	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0022	7094	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0023	7092	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0024	7092	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0025	7093	1	0	0	1	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0026	7092	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0027	7092	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0028	7092	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0029	7092	1	0	1	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0030	7092	1	0	0	1	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0031	7092	1	0	0	0	1	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0032	7092	1	0	0	1	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0033	7092	1	0	1	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0034	7092	1	0	1	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0035	7092	1	0	0	1	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0036	7092	1	0	0	1	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0037	7092	1	0	1	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0038	7092	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0039	7092	1	0	0	0	0	1	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0040	7092	1	0	0	1	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0041	7092	1	0	0	1	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0042	7092	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	1/0	t0043	7080	1	0	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0044	7092	1	0	1	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0045	7092	1	0	0	1	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0046	7092	1	0	0	1	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0047	7092	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	t0048	7082	1	0	0	0	0	1	copy fasta	MIB1	chr18	21735792	21875953
MIB2_chr1_1610500_1635605	1/1	t0001	339	242	41	32	141	8	18	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	t0002	339	150	42	36	41	8	23	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	t0003	339	12	11	1	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	t0004	339	4	1	1	0	2	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	t0005	339	2	2	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	t0006	339	1	0	0	0	0	1	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	t0007	339	1	1	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MICAL1_chr6_109439062_109460772	0/0	t0001	227	245	65	37	111	8	24	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	1/1	t0002	227	178	21	41	90	6	18	copy fasta	MICAL1	chr6	109439062	109460772