JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MICAL1_chr6_109439062_109460772	0/0	t0003	227	7	7	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	t0004	227	3	0	0	3	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	t0005	227	1	1	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL2_chr11_12105590_12268785	1/1	t0001	529	304	71	54	135	10	32	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	t0002	529	34	17	10	4	0	3	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	t0003	529	13	1	0	7	0	5	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	t0004	529	2	1	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	t0005	529	2	2	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	t0006	529	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	t0007	529	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	t0008	529	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL3_chr22_17782649_18029561	1/1	t0001	3439	110	5	32	49	6	16	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0002	3438	71	35	11	15	1	9	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0003	3438	17	9	1	4	0	3	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0004	3438	14	3	4	4	1	2	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0005	3439	13	10	3	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0006	3438	5	5	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0007	3438	5	0	0	5	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0008	3438	4	4	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0009	3439	3	3	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0010	3439	2	0	0	2	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0011	3438	2	0	0	2	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0012	3439	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0013	3438	2	1	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0014	3439	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0015	3438	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0016	3439	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0017	3428	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0018	3439	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0019	3439	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0020	3438	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0021	3438	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0022	3438	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0023	3439	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0024	3439	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0025	3439	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0026	3439	1	0	0	0	1	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0027	3439	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0028	3439	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0029	3439	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0030	3439	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0031	3439	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0032	3438	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0033	3439	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0034	3438	1	0	0	0	1	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0035	3438	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0036	3438	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	t0037	3439	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICALL1_chr22_37901297_37947822	1/1	t0001	2119	288	60	59	116	17	34	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0002	2120	10	4	1	5	0	0	copy fasta	MICALL1	chr22	37901297	37947822