JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MICALL1_chr22_37901297_37947822	0/0	t0003	2119	10	10	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0004	2118	8	1	2	5	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0005	2120	7	7	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0006	2119	4	0	1	3	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0007	2119	3	0	0	0	0	3	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0008	2125	3	3	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0009	2119	2	0	0	0	0	2	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0010	2119	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0011	2119	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0012	2119	1	0	0	0	1	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0013	2119	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0014	2119	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0015	2119	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0016	2119	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0017	2119	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0018	2119	1	0	0	0	0	1	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0019	2119	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0020	2119	1	0	1	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0021	2120	1	0	1	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0022	2119	1	0	1	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0023	2120	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	t0024	2119	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL2_chr7_1429359_1464470	1/1	t0001	382	226	57	55	74	12	26	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	t0002	382	33	17	12	4	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	t0003	382	18	11	3	0	0	4	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	t0004	382	2	0	0	2	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	t0005	426	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICA_chr6_31398595_31420315	0/0	t0001	372	186	30	27	97	3	29	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/1	t0002	372	95	26	18	33	6	11	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	t0003	372	88	18	19	40	4	7	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	t0004	372	26	2	4	17	2	1	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	t0005	372	14	8	4	0	2	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	t0006	372	14	1	1	12	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	t0007	372	12	0	0	11	1	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	t0008	372	4	1	3	0	0	0	copy fasta	MICA	chr6	31398595	31420315
MICB_chr6_31493145_31516124	0/1	t0001	1263	336	63	54	173	11	34	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0002	1265	75	19	12	35	3	6	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0003	1257	12	1	6	1	3	1	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0004	1262	11	3	3	0	0	5	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0005	1257	6	1	4	0	1	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0006	1265	5	0	0	4	0	1	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0007	1263	4	2	1	0	0	1	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0008	1263	2	2	0	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0009	1263	1	0	0	1	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0010	1251	1	1	0	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0011	1263	1	0	0	1	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0012	1263	1	1	0	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0013	1263	1	0	1	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0014	1263	1	0	1	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	t0015	1263	1	0	0	1	0	0	copy fasta	MICB	chr6	31493145	31516124