JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MICB_chr6_31493145_31516124	0/0	t0016	1265	1	1	0	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICOS10_chr1_19591979_19634820	0/1	t0001	3421	76	4	16	48	4	3	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0002	3487	71	4	22	27	3	15	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0003	3488	36	10	4	15	2	5	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0004	3484	26	23	3	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0005	3487	24	8	3	10	0	3	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0006	3486	15	1	4	2	3	5	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0007	3488	10	0	1	9	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0008	3422	10	0	3	4	0	3	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0009	3486	8	1	3	4	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0010	3491	5	5	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0011	3489	5	5	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0012	3491	4	4	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0013	3487	4	4	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0014	3488	3	2	1	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0015	3487	3	0	0	3	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0016	3488	3	0	1	1	0	1	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0017	3487	3	0	0	3	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0018	3489	2	1	0	1	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0019	3487	2	0	1	1	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0020	3421	2	0	0	2	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0021	3421	2	0	0	2	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0022	3487	2	2	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0023	3487	1	0	1	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0024	3488	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0025	3491	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0026	3490	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0027	3491	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0028	3487	1	0	0	0	0	1	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	1/0	t0029	3487	1	0	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0030	3488	1	0	1	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0031	3488	1	0	1	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0032	3487	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0033	3488	1	0	0	1	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0034	3485	1	0	1	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0035	3490	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0036	3484	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0037	3485	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0038	3484	1	0	1	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0039	3484	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0040	3483	1	0	1	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0041	3489	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0042	3487	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0043	3487	1	0	0	1	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0044	3488	1	0	0	1	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0045	3487	1	0	1	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0046	3489	1	0	0	0	0	1	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0047	3487	1	0	1	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0048	3487	1	0	0	1	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0049	3486	1	0	0	1	0	0	copy fasta	MICOS10	chr1	19591979	19634820