Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGAP32_chr11_128960060_129197325	1/0	t0003	3975	53	1	10	24	3	14	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/1	t0004	3974	32	2	6	19	1	3	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0005	3974	19	7	4	6	2	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0006	3976	12	5	1	5	0	1	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0007	3975	10	4	3	3	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0008	3977	4	2	0	0	0	2	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0009	3974	3	3	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0010	3975	3	0	2	0	1	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0011	3975	3	0	1	0	0	2	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0012	3974	3	0	0	2	0	1	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0013	3975	3	0	0	3	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0014	3977	2	1	1	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0015	3976	2	2	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0016	3975	2	0	0	0	0	2	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0017	3975	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0018	3976	1	0	1	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0019	3976	1	0	0	1	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0020	3976	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0021	3976	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0022	3975	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0023	3975	1	0	0	0	0	1	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0024	3975	1	0	0	0	0	1	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0025	3975	1	0	0	1	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0026	3975	1	0	0	0	0	1	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0027	3975	1	0	1	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0028	3975	1	0	0	1	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0029	4008	1	0	0	1	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0030	3975	1	0	0	0	1	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0031	3975	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0032	3975	1	0	0	1	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0033	3974	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0034	3974	1	0	0	1	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0035	3974	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0036	3975	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0037	3975	1	1	0	0	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0038	3975	1	0	0	1	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP32_chr11_128960060_129197325	0/0	t0039	3974	1	0	0	1	0	0	copy fasta	ARHGAP32	chr11	128960060	129197325
ARHGAP33_chr19_35770564_35793822	1/1	t0001	489	420	96	72	190	12	48	copy fasta	ARHGAP33	chr19	35770564	35793822
ARHGAP35_chr19_46855997_47010077	1/0	t0001	4791	65	20	14	22	5	3	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	t0002	4793	38	1	4	26	0	7	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	t0003	4789	33	7	11	11	2	2	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	t0004	4787	30	4	1	21	0	4	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	t0005	4792	17	0	6	7	2	2	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	t0006	4789	13	11	2	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	t0007	4791	10	7	0	3	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/1	t0008	4794	5	0	2	1	0	1	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	t0009	4795	5	0	2	2	1	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	t0010	4789	5	0	4	0	0	1	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	t0011	4789	5	5	0	0	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077
ARHGAP35_chr19_46855997_47010077	0/0	t0012	4792	4	0	0	4	0	0	copy fasta	ARHGAP35	chr19	46855997	47010077