JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MICOS10_chr1_19591979_19634820	0/0	t0050	3421	1	0	0	0	0	1	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0051	3487	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0052	3488	1	0	0	1	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0053	3489	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	t0054	3489	1	1	0	0	0	0	copy fasta	MICOS10	chr1	19591979	19634820
MICOS13_chr19_5673422_5685516	1/1	t0001	160	366	85	79	142	16	42	copy fasta	MICOS13	chr19	5673422	5685516
MICOS13_chr19_5673422_5685516	0/0	t0002	160	7	0	1	6	0	0	copy fasta	MICOS13	chr19	5673422	5685516
MICOS13_chr19_5673422_5685516	0/0	t0003	160	5	5	0	0	0	0	copy fasta	MICOS13	chr19	5673422	5685516
MICOS13_chr19_5673422_5685516	0/0	t0004	160	2	2	0	0	0	0	copy fasta	MICOS13	chr19	5673422	5685516
MICOS13_chr19_5673422_5685516	0/0	t0005	160	1	0	0	1	0	0	copy fasta	MICOS13	chr19	5673422	5685516
MICOS13_chr19_5673422_5685516	0/0	t0006	160	1	0	0	1	0	0	copy fasta	MICOS13	chr19	5673422	5685516
MICU1_chr10_72362340_72631079	1/0	t0001	926	98	42	24	16	4	11	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/1	t0002	926	84	27	24	14	4	14	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/0	t0003	926	16	11	0	5	0	0	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/0	t0004	926	5	5	0	0	0	0	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/0	t0005	926	2	0	1	1	0	0	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/0	t0006	926	1	0	0	0	0	1	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/0	t0007	926	1	1	0	0	0	0	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/0	t0008	926	1	0	1	0	0	0	copy fasta	MICU1	chr10	72362340	72631079
MICU2_chr13_21487691_21609170	0/0	t0001	581	136	37	24	51	6	18	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/1	t0002	581	91	3	21	55	4	7	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	t0003	581	55	28	15	0	6	6	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	t0004	581	14	11	2	0	0	1	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	t0005	581	9	8	1	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	t0006	581	5	4	1	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	t0007	581	4	2	0	0	0	2	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	1/0	t0008	581	1	0	0	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	t0009	581	1	1	0	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU3_chr8_17022238_17127642	0/0	t0001	2398	111	42	24	34	2	9	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	1/0	t0002	2398	97	12	16	49	4	15	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/1	t0003	2398	61	6	16	30	5	3	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0004	2398	43	0	4	37	0	2	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0005	2398	8	7	1	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0006	2398	7	7	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0007	2398	4	0	0	4	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0008	2398	4	4	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0009	2398	4	0	0	4	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0010	2398	3	3	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0011	2398	3	0	1	0	0	2	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0012	2398	3	3	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0013	2398	3	1	1	0	0	1	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0014	2398	3	3	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0015	2398	2	0	0	2	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0016	2398	2	0	0	2	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0017	2398	2	2	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0018	2398	2	0	0	0	0	2	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0019	2398	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0020	2398	1	0	1	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0021	2398	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0022	2398	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642