JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MICU3_chr8_17022238_17127642	0/0	t0023	2398	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0024	2398	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0025	2398	1	1	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0026	2398	1	1	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0027	2398	1	0	0	0	1	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0028	2398	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0029	2398	1	1	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	t0030	2398	1	1	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MID1IP1_chrX_38796459_38811532	0/0	t0001	3207	140	56	20	40	7	17	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	1/1	t0002	3207	125	4	29	77	2	11	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0003	3208	15	0	0	15	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0004	3207	4	0	0	4	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0005	3208	4	0	0	4	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0006	3207	3	3	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0007	3207	3	3	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0008	3207	3	0	3	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0009	3207	2	2	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0010	3207	2	2	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0011	3206	2	1	1	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0012	3207	2	2	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0013	3207	2	0	0	0	0	2	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0014	3207	2	0	0	0	2	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0015	3209	1	0	0	1	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0016	3208	1	0	0	1	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0017	3207	1	0	0	1	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0018	3205	1	1	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0019	3207	1	0	0	1	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0020	3207	1	1	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0021	3208	1	0	0	0	0	1	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0022	3207	1	1	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0023	3207	1	0	0	0	0	1	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0024	3207	1	0	0	0	0	1	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0025	3207	1	1	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0026	3206	1	0	0	1	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0027	3207	1	0	0	1	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0028	3211	1	0	0	1	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0029	3208	1	0	0	0	0	1	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0030	3208	1	0	0	1	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	t0031	3208	1	1	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1_chrX_10440556_10625585	1/1	t0001	4165	122	26	19	55	7	13	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0002	4165	7	6	1	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0003	4166	5	1	0	4	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0004	4167	5	3	2	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0005	4164	4	0	1	3	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0006	4167	3	3	0	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0007	4166	2	2	0	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0008	4166	2	1	0	1	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0009	4165	2	2	0	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0010	4166	2	2	0	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0011	4167	1	1	0	0	0	0	copy fasta	MID1	chrX	10440556	10625585