JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MID1_chrX_10440556_10625585	0/0	t0012	4165	1	0	0	0	0	1	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0013	4168	1	0	0	1	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0014	4166	1	0	0	1	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0015	4165	1	1	0	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0016	4165	1	0	0	1	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0017	4165	1	0	0	0	0	1	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0018	4164	1	0	0	1	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0019	4165	1	0	1	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0020	4167	1	1	0	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	t0021	4165	1	1	0	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID2_chrX_107820866_107936637	1/1	t0001	5126	96	26	16	34	4	14	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0002	5126	41	5	5	22	3	6	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0003	5126	9	8	1	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0004	5126	7	0	0	7	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0005	5126	7	7	0	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0006	5126	5	4	1	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0007	5126	5	4	1	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0008	5126	3	3	0	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0009	5126	2	2	0	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0010	5126	2	2	0	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0011	5126	1	1	0	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0012	5126	1	0	1	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0013	5126	1	0	0	1	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	t0014	5126	1	1	0	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MIDEAS_chr14_73710122_73765303	0/0	t0001	4510	45	1	3	32	3	6	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0002	4500	27	1	17	1	2	6	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0003	4510	22	2	5	12	1	2	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0004	4512	18	1	8	3	0	6	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0005	4508	13	5	1	7	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0006	4508	13	9	4	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0007	4511	12	0	5	4	0	3	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0008	4509	11	11	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/1	t0009	4513	9	0	4	3	0	1	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0010	4510	8	0	2	6	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0011	4511	8	0	3	5	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0012	4511	7	0	0	6	0	1	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0013	4509	6	0	2	1	0	3	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0014	4511	6	1	0	3	1	1	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0015	4508	5	5	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0016	4508	5	4	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0017	4511	5	0	0	5	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0018	4509	5	0	2	3	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0019	4511	5	1	2	0	2	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0020	4510	5	5	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0021	4508	4	4	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0022	4510	4	3	1	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0023	4509	4	2	2	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0024	4509	3	0	0	3	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0025	4510	3	0	2	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0026	4508	3	0	0	3	0	0	copy fasta	MIDEAS	chr14	73710122	73765303