JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIDEAS_chr14_73710122_73765303	0/0	t0077	4511	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0078	4505	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0079	4512	1	0	0	0	0	1	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0080	4505	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0081	4515	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0082	4516	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0083	4509	1	0	0	0	0	1	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	1/0	t0084	4510	1	0	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0085	4510	1	0	1	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0086	4513	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0087	4510	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0088	4511	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0089	4510	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0090	4510	1	0	1	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0091	4512	1	0	1	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0092	4511	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0093	4512	1	0	0	0	1	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	t0094	4511	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDN_chr19_1243583_1264143	0/0	t0001	2364	45	0	16	27	0	2	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	1/0	t0002	2357	33	13	5	8	3	3	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/1	t0003	2358	29	2	17	6	1	2	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0004	2361	20	14	2	2	0	2	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0005	2364	16	0	0	14	1	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0006	2360	14	2	1	8	0	3	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0007	2357	10	0	3	5	0	2	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0008	2364	10	1	0	9	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0009	2358	9	4	1	4	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0010	2364	9	1	0	7	1	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0011	2365	8	0	1	7	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0012	2361	8	1	5	0	1	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0013	2358	8	4	1	3	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0014	2361	7	2	1	0	2	2	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0015	2363	6	0	1	4	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0016	2365	6	0	2	4	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0017	2359	6	2	0	3	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0018	2361	6	4	1	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0019	2361	6	1	2	0	0	3	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0020	2357	6	1	0	5	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0021	2360	5	0	1	2	2	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0022	2361	5	0	2	1	0	2	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0023	2359	5	3	0	0	1	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0024	2365	5	2	1	2	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0025	2358	5	2	2	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0026	2357	5	2	0	1	0	2	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0027	2359	5	2	3	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0028	2364	4	1	1	2	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0029	2357	4	0	0	2	1	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0030	2358	4	1	2	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0031	2357	4	0	0	4	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0032	2363	4	3	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143