JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIDN_chr19_1243583_1264143	0/0	t0033	2358	4	4	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0034	2358	4	1	0	3	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0035	2358	3	0	1	1	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0036	2361	3	0	0	2	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0037	2362	3	3	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0038	2361	3	0	0	3	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0039	2359	2	2	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0040	2357	2	0	0	0	2	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0041	2358	2	0	0	2	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0042	2360	2	0	0	1	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0043	2360	2	2	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0044	2361	2	2	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0045	2358	2	0	2	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0046	2363	2	0	0	0	0	2	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0047	2361	2	2	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0048	2360	2	0	0	1	1	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0049	2362	2	1	1	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0050	2365	2	0	0	1	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0051	2360	2	0	0	2	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0052	2359	2	0	0	2	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0053	2360	2	0	2	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0054	2358	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0055	2364	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0056	2363	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0057	2357	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0058	2357	1	0	0	0	1	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0059	2358	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0060	2362	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0061	2361	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0062	2362	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0063	2364	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0064	2363	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0065	2364	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0066	2364	1	0	1	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0067	2364	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0068	2364	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0069	2361	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0070	2357	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0071	2358	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0072	2358	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0073	2358	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0074	2362	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0075	2363	1	0	1	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0076	2357	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0077	2357	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0078	2357	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0079	2358	1	0	1	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0080	2357	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0081	2357	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0082	2357	1	0	1	0	0	0	copy fasta	MIDN	chr19	1243583	1264143