JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIDN_chr19_1243583_1264143	0/0	t0083	2357	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0084	2358	1	0	1	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0085	2359	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0086	2362	1	0	1	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0087	2360	1	0	1	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0088	2361	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0089	2362	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0090	2362	1	0	0	0	1	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0091	2364	1	0	1	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0092	2363	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0093	2363	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0094	2371	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0095	2370	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0096	2360	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0097	2362	1	0	1	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0098	2361	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0099	2358	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0100	2357	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0101	2361	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0102	2357	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0103	2358	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	t0104	2362	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIEF1_chr22_39497290_39523132	0/0	t0001	4298	186	24	38	101	3	20	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/1	t0002	4298	59	13	5	24	7	9	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	1/0	t0003	4297	37	1	15	3	6	11	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0004	4298	11	11	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0005	4295	9	8	1	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0006	4299	9	1	4	0	0	4	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0007	4298	5	0	0	5	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0008	4298	4	2	2	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0009	4295	4	3	1	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0010	4295	4	0	0	4	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0011	4298	4	4	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0012	4298	4	4	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0013	4295	3	1	2	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0014	4298	3	0	1	2	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0015	4297	3	2	1	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0016	4297	3	2	0	1	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0017	4296	3	3	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0018	4298	2	0	0	2	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0019	4298	2	0	2	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0020	4298	2	0	2	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0021	4298	2	0	0	0	0	2	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0022	4298	2	0	0	2	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0023	4298	2	0	0	2	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0024	4298	2	0	0	2	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0025	4297	2	2	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0026	4296	2	2	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0027	4295	2	2	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0028	4295	2	2	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132