JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIEF1_chr22_39497290_39523132	0/0	t0029	4295	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0030	4295	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0031	4298	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0032	4297	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0033	4297	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0034	4298	1	0	0	1	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0035	4297	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0036	4298	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0037	4298	1	0	1	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0038	4298	1	0	0	0	0	1	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0039	4298	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0040	4298	1	0	0	1	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0041	4298	1	0	1	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0042	4298	1	0	1	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0043	4298	1	0	0	1	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0044	4297	1	0	0	0	0	1	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0045	4298	1	0	1	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0046	4297	1	0	0	1	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0047	4296	1	0	0	0	1	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0048	4298	1	0	0	0	0	1	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0049	4298	1	0	0	1	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0050	4297	1	0	0	1	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0051	4296	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0052	4298	1	0	0	0	1	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0053	4296	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0054	4297	1	0	0	0	0	1	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	t0055	4298	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF2_chr17_18255662_18271552	1/1	t0001	1872	221	57	45	86	9	22	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0002	1869	93	14	16	50	2	11	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0003	1872	80	17	11	44	1	7	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0004	1872	5	1	2	2	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0005	1872	3	0	3	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0006	1872	3	3	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0007	1872	2	0	0	0	0	2	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0008	1872	2	2	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0009	1869	1	1	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0010	1872	1	0	0	0	0	1	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0011	1872	1	0	1	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0012	1872	1	1	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0013	1872	1	0	0	0	0	1	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0014	1872	1	1	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0015	1872	1	0	0	1	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0016	1872	1	0	0	1	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	t0017	1872	1	1	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEN1_chr17_39723510_39735532	0/1	t0001	1050	307	50	66	145	15	30	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	t0002	1051	19	18	0	0	0	1	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	t0003	1051	13	10	0	0	0	3	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	t0004	1051	5	0	2	0	3	0	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	t0005	1051	4	4	0	0	0	0	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	t0006	1050	4	0	0	4	0	0	copy fasta	MIEN1	chr17	39723510	39735532