JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIEN1_chr17_39723510_39735532	0/0	t0007	1050	3	3	0	0	0	0	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	t0008	1051	2	2	0	0	0	0	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	1/0	t0009	1050	2	1	0	0	0	0	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	t0010	1051	1	0	0	0	0	1	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	t0011	1050	1	1	0	0	0	0	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	t0012	1050	1	0	0	1	0	0	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	t0013	1050	1	1	0	0	0	0	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	t0014	1050	1	0	0	0	0	1	copy fasta	MIEN1	chr17	39723510	39735532
MIER1_chr1_66919990_66993619	0/1	t0001	3759	68	13	4	38	2	10	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0002	3773	24	8	3	7	2	4	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0003	3772	22	0	5	13	2	2	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0004	3754	21	17	4	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0005	3759	17	9	2	3	1	2	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0006	3758	13	2	5	6	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0007	3758	11	1	5	1	2	2	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0008	3758	9	9	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	1/0	t0009	3759	8	0	4	0	1	2	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0010	3753	5	4	1	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0011	3760	5	0	3	0	0	2	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0012	3758	4	2	0	2	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0013	3774	4	2	2	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0014	3759	3	3	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0015	3756	3	3	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0016	3759	3	0	0	0	0	3	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0017	3761	3	2	0	1	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0018	3776	3	0	0	3	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0019	3757	2	0	0	1	1	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0020	3774	2	2	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0021	3758	2	2	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0022	3759	2	0	0	2	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0023	3759	2	0	1	0	1	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0024	3755	1	1	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0025	3760	1	0	0	0	0	1	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0026	3773	1	0	1	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0027	3772	1	0	0	1	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0028	3773	1	0	1	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0029	3774	1	1	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0030	3774	1	1	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0031	3758	1	1	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0032	3759	1	0	0	1	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0033	3759	1	0	1	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0034	3759	1	0	0	1	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	t0035	3777	1	1	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER2_chr19_300573_349796	1/1	t0001	1132	298	42	64	133	15	42	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0002	1132	54	25	16	10	1	2	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0003	1132	13	13	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0004	1132	5	5	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0005	1132	5	0	0	4	0	1	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0006	1132	1	1	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0007	1132	1	1	0	0	0	0	copy fasta	MIER2	chr19	300573	349796