JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIER2_chr19_300573_349796	0/0	t0008	1132	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0009	1132	1	1	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0010	1132	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0011	1132	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0012	1132	1	0	0	0	0	1	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0013	1132	1	1	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	t0014	1132	1	1	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER3_chr5_56914603_56957123	0/0	t0001	3547	205	39	30	109	4	23	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/1	t0002	3547	112	30	31	31	4	15	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0003	3547	47	3	5	32	2	5	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	1/0	t0004	3547	11	0	0	10	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0005	3543	3	3	0	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0006	3547	2	2	0	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0007	3547	1	0	0	1	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0008	3547	1	1	0	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0009	3547	1	0	0	0	0	1	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0010	3547	1	1	0	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0011	3547	1	0	0	1	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0012	3547	1	0	0	1	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0013	3547	1	0	1	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0014	3547	1	1	0	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0015	3543	1	0	1	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0016	3547	1	1	0	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0017	3547	1	0	0	1	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0018	3547	1	1	0	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0019	3547	1	0	0	0	0	1	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	t0020	3547	1	0	0	0	0	1	copy fasta	MIER3	chr5	56914603	56957123
MIF4GD_chr17_75261228_75276231	1/1	t0001	651	266	55	50	106	14	39	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	t0002	651	29	16	3	3	0	7	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	t0003	650	16	1	6	9	0	0	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	t0004	651	15	14	1	0	0	0	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	t0005	651	4	2	2	0	0	0	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	t0006	650	3	3	0	0	0	0	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	t0007	651	1	1	0	0	0	0	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	t0008	651	1	1	0	0	0	0	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	t0009	651	1	1	0	0	0	0	copy fasta	MIF4GD	chr17	75261228	75276231
MIF_chr22_23889383_23900223	0/1	t0001	210	415	91	66	194	14	49	copy fasta	MIF	chr22	23889383	23900223
MIF_chr22_23889383_23900223	0/0	t0002	210	9	0	0	8	0	1	copy fasta	MIF	chr22	23889383	23900223
MIF_chr22_23889383_23900223	0/0	t0003	210	8	7	1	0	0	0	copy fasta	MIF	chr22	23889383	23900223
MIF_chr22_23889383_23900223	0/0	t0004	210	4	0	0	4	0	0	copy fasta	MIF	chr22	23889383	23900223
MIF_chr22_23889383_23900223	0/0	t0005	210	2	0	2	0	0	0	copy fasta	MIF	chr22	23889383	23900223
MIF_chr22_23889383_23900223	0/0	t0006	210	1	0	0	1	0	0	copy fasta	MIF	chr22	23889383	23900223
MIF_chr22_23889383_23900223	0/0	t0007	210	1	0	1	0	0	0	copy fasta	MIF	chr22	23889383	23900223
MIF_chr22_23889383_23900223	0/0	t0008	210	1	0	0	1	0	0	copy fasta	MIF	chr22	23889383	23900223
MIGA1_chr1_77774649_77884540	0/0	t0001	4585	78	10	7	47	4	10	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/1	t0002	4586	54	6	18	16	3	10	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	1/0	t0003	4580	30	15	5	4	0	5	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0004	4580	25	0	0	24	0	1	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0005	4579	14	1	3	7	1	2	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0006	4587	9	1	4	1	1	2	copy fasta	MIGA1	chr1	77774649	77884540