Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
ABLIM1_chr10_114426112_114663275	0/0	t0050	5219	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0051	5219	1	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0052	5217	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0053	5217	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0054	5217	1	0	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0055	5217	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0056	5215	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/1	t0057	5211	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0058	5205	1	0	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0059	5218	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0060	5230	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0061	5227	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0062	5222	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0063	5217	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0064	5216	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0065	5232	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0066	5230	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0067	5229	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0068	5227	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0069	5228	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0070	5227	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0071	5228	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0072	5225	1	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0073	5226	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0074	5225	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0075	5225	1	0	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0076	5224	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0077	5223	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0078	5221	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0079	5222	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0080	5218	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0081	5217	1	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0082	5216	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0083	5213	1	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0084	5214	1	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0085	5213	1	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0086	5213	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0087	5214	1	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0088	5213	1	0	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0089	5199	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0090	5227	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0091	5225	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0092	5221	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0093	5223	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0094	5221	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0095	5220	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0096	5219	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0097	5217	1	0	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0098	5218	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0099	5218	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275