JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIGA1_chr1_77774649_77884540	0/0	t0007	4581	8	5	1	0	0	2	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0008	4579	8	0	1	7	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0009	4579	6	6	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0010	4584	5	1	2	1	0	1	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0011	4580	4	4	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0012	4579	4	4	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0013	4581	4	4	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0014	4579	3	3	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0015	4586	3	3	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0016	4580	3	0	0	3	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0017	4580	3	0	1	0	0	2	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0018	4586	1	1	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0019	4579	1	1	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0020	4580	1	1	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0021	4590	1	0	1	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0022	4585	1	0	0	0	0	1	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0023	4585	1	1	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0024	4585	1	0	0	1	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0025	4584	1	1	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0026	4579	1	1	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0027	4586	1	0	0	0	0	1	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0028	4581	1	0	0	1	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0029	4580	1	1	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0030	4579	1	1	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0031	4585	1	0	0	0	1	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0032	4580	1	0	1	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0033	4581	1	1	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0034	4581	1	0	0	0	0	1	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0035	4580	1	1	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	t0036	4580	1	1	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA2_chr9_129031626_129077082	1/1	t0001	1829	253	64	55	96	6	30	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0002	1829	19	7	0	7	0	5	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0003	1829	13	13	0	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0004	1829	4	3	1	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0005	1829	2	0	0	2	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0006	1829	2	2	0	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0007	1829	1	0	0	0	0	1	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0008	1829	1	0	0	1	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0009	1829	1	0	0	1	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0010	1829	1	1	0	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0011	1829	1	0	0	1	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0012	1829	1	1	0	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	t0013	1829	1	1	0	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIIP_chr1_12014498_12037045	1/1	t0001	375	380	78	64	175	16	45	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	t0002	375	12	10	2	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	t0003	375	11	0	0	10	0	1	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	t0004	375	6	6	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	t0005	375	2	2	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	t0006	375	1	0	0	1	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	t0007	375	1	0	0	1	0	0	copy fasta	MIIP	chr1	12014498	12037045