JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIIP_chr1_12014498_12037045	0/0	t0008	375	1	0	0	1	0	0	copy fasta	MIIP	chr1	12014498	12037045
MILR1_chr17_64444115_64473643	1/1	t0001	417	349	83	60	151	11	42	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	t0002	417	31	3	11	12	3	2	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	t0003	417	11	10	1	0	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	t0004	417	1	0	0	0	0	1	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	t0005	417	1	0	0	1	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	t0006	417	1	0	0	0	0	1	copy fasta	MILR1	chr17	64444115	64473643
MINAR1_chr15_79427336_79477304	1/0	t0001	4176	108	7	35	41	4	20	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0002	4176	73	5	21	36	8	3	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/1	t0003	4176	70	32	12	16	0	9	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0004	4174	46	0	0	45	0	1	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0005	4179	9	8	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0006	4176	8	0	0	6	0	2	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0007	4176	7	5	2	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0008	4176	7	7	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0009	4176	4	0	0	4	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0010	4201	4	4	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0011	4176	3	3	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0012	4176	3	2	0	0	1	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0013	4175	3	2	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0014	4176	3	0	0	3	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0015	4176	2	2	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0016	4175	2	1	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0017	4177	2	2	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0018	4176	2	0	0	2	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0019	4176	2	0	0	2	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0020	4176	2	2	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0021	4176	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0022	4179	1	0	0	0	0	1	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0023	4176	1	0	0	0	0	1	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0024	4176	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0025	4176	1	0	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0026	4174	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0027	4173	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0028	4175	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0029	4176	1	0	0	0	1	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0030	4176	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0031	4176	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0032	4176	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0033	4155	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0034	4156	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0035	4176	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0036	4175	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0037	4176	1	0	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0038	4176	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0039	4176	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0040	4179	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0041	4176	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0042	4176	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0043	4175	1	0	0	0	0	1	copy fasta	MINAR1	chr15	79427336	79477304