JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MINAR1_chr15_79427336_79477304	0/0	t0044	4176	1	0	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0045	4158	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0046	4176	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0047	4158	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0048	4176	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0049	4176	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	t0050	4176	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR2_chr5_129743094_129771732	0/0	t0001	1765	96	6	34	35	5	16	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0002	1765	83	0	8	68	3	4	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0003	1770	31	7	7	15	2	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0004	1771	30	0	4	19	0	7	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0005	1768	19	12	3	1	0	3	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0006	1769	13	7	3	1	0	2	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0007	1769	10	6	0	4	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0008	1765	8	7	1	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0009	1766	7	3	1	0	1	2	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0010	1768	7	0	0	7	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0011	1767	7	0	2	0	1	4	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0012	1770	6	0	0	6	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0013	1774	6	4	2	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0014	1765	5	0	0	4	0	1	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0015	1767	5	5	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0016	1780	5	0	0	4	0	1	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0017	1777	5	1	0	4	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0018	1773	5	3	2	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0019	1766	4	0	1	3	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0020	1765	4	1	1	2	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0021	1772	4	0	1	3	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0022	1767	4	0	0	4	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0023	1779	4	0	0	4	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0024	1767	4	3	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0025	1766	3	0	0	3	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0026	1766	3	3	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0027	1767	3	1	1	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/1	t0028	1768	3	1	0	0	0	1	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0029	1765	2	0	0	2	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0030	1766	2	0	1	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0031	1771	2	0	0	2	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0032	1772	2	1	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0033	1769	2	0	0	2	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0034	1778	2	1	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0035	1774	2	2	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0036	1768	2	2	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0037	1767	2	1	0	0	0	1	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0038	1766	2	1	1	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0039	1772	2	2	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0040	1766	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0041	1765	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0042	1765	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0043	1766	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732