JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MINAR2_chr5_129743094_129771732	0/0	t0044	1771	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0045	1766	1	0	0	0	0	1	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0046	1771	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0047	1770	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0048	1770	1	0	0	0	0	1	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0049	1768	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0050	1765	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0051	1771	1	0	1	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0052	1768	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0053	1768	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0054	1769	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0055	1771	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0056	1780	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0057	1784	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0058	1786	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0059	1782	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0060	1780	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0061	1773	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0062	1750	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0063	1767	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0064	1767	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0065	1767	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	1/0	t0066	1767	1	0	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	t0067	1773	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINDY1_chr1_150991835_151011902	0/1	t0001	1133	316	21	74	167	13	40	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	t0002	1133	72	38	1	28	1	4	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	1/0	t0003	1133	18	17	0	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	t0004	1133	16	11	5	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	t0005	1133	4	4	0	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	t0006	1133	3	0	0	3	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	t0007	1134	3	0	1	0	2	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	t0008	1133	1	1	0	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	t0009	1133	1	1	0	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	t0010	1133	1	0	1	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	t0011	1133	1	1	0	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY2_chr15_58766302_58866900	0/0	t0001	7387	62	5	6	36	3	12	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0002	7389	40	0	2	34	0	4	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0003	7389	39	7	13	11	3	5	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0004	7385	27	1	14	11	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0005	7387	18	0	0	18	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0006	7389	14	6	1	6	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0007	7388	11	1	2	7	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0008	7390	9	0	0	8	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0009	7390	9	0	2	4	1	2	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0010	7384	7	3	2	0	1	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0011	7384	6	6	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0012	7384	6	3	0	2	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/1	t0013	7388	6	0	2	0	0	3	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0014	7385	5	5	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0015	7389	5	0	4	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900