JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MINDY2_chr15_58766302_58866900	0/0	t0016	7385	5	0	0	5	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0017	7388	4	4	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0018	7385	4	2	2	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0019	7384	3	3	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0020	7386	3	0	0	2	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0021	7386	3	0	0	2	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0022	7385	3	0	0	3	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0023	7388	3	0	1	2	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0024	7385	3	0	1	1	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0025	7385	2	2	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	1/0	t0026	7385	2	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0027	7391	2	0	0	2	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0028	7390	2	1	1	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0029	7389	2	2	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0030	7388	2	0	0	1	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0031	7389	2	2	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0032	7383	2	0	1	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0033	7388	2	0	0	2	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0034	7387	2	0	0	2	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0035	7388	2	0	0	2	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0036	7386	2	0	1	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0037	7385	2	0	2	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0038	7387	2	0	0	0	2	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0039	7385	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0040	7389	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0041	7389	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0042	7388	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0043	7390	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0044	7387	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0045	7387	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0046	7389	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0047	7386	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0048	7385	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0049	7383	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0050	7389	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0051	7390	1	0	1	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0052	7386	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0053	7384	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0054	7385	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0055	7385	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0056	7387	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0057	7387	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0058	7388	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0059	7389	1	0	0	0	1	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0060	7387	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0061	7387	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0062	7385	1	0	0	0	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0063	7389	1	0	1	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0064	7387	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0065	7387	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900