JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MINDY2_chr15_58766302_58866900	0/0	t0066	7390	1	0	1	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0067	7389	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0068	7386	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0069	7386	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0070	7390	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0071	7391	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0072	7389	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0073	7390	1	0	0	0	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0074	7389	1	0	1	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0075	7391	1	0	1	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0076	7389	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0077	7390	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0078	7389	1	0	0	0	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0079	7389	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0080	7389	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0081	7388	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0082	7390	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0083	7388	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0084	7386	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0085	7384	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0086	7389	1	0	1	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0087	7389	1	0	1	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0088	7385	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0089	7390	1	0	1	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0090	7389	1	0	1	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0091	7389	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0092	7390	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0093	7388	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0094	7389	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0095	7387	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0096	7386	1	0	0	0	1	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0097	7385	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0098	7384	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	t0099	7387	1	0	0	0	0	1	copy fasta	MINDY2	chr15	58766302	58866900
MINDY3_chr10_15773174_15865507	1/1	t0001	1027	139	33	24	56	5	19	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	t0002	1027	86	35	19	15	6	11	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	t0003	1027	8	6	2	0	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	t0004	1027	2	2	0	0	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	t0005	1027	2	0	1	0	1	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	t0006	1027	1	1	0	0	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	t0007	1027	1	0	0	1	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	t0008	1027	1	1	0	0	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	t0009	1027	1	1	0	0	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	t0010	1027	1	1	0	0	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY4B_chr3_150865376_150910439	1/1	t0001	670	204	23	47	106	8	18	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	t0002	670	117	59	21	10	6	21	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	t0003	670	89	13	8	64	0	4	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	t0004	670	16	0	0	16	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	t0005	670	3	3	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	t0006	670	1	0	0	0	0	1	copy fasta	MINDY4B	chr3	150865376	150910439