JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MINDY4B_chr3_150865376_150910439	0/0	t0007	670	1	0	0	0	0	1	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	t0008	670	1	0	0	0	0	1	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4_chr7_30766417_30897387	1/1	t0001	460	286	78	37	129	8	32	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	t0002	460	5	5	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	t0003	460	5	5	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	t0004	460	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	t0005	460	1	0	1	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	t0006	460	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	t0007	460	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINK1_chr17_4828340_4903061	0/0	t0001	1022	50	4	19	9	5	13	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0002	1022	49	11	14	17	2	5	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0003	1022	39	1	2	23	1	12	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0004	1022	23	17	5	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0005	1022	21	6	9	6	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0006	1019	19	3	2	13	1	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0007	1022	15	1	4	6	3	1	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0008	1019	12	10	0	2	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0009	1022	12	10	2	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0010	1019	9	0	3	4	0	2	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0011	1022	8	0	0	7	0	1	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0012	1022	8	1	0	7	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0013	1022	7	0	0	7	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0014	1022	7	2	0	5	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0015	1022	7	0	4	0	0	3	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0016	1022	5	4	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0017	1022	5	0	0	5	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0018	1019	4	2	0	2	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/1	t0019	1022	4	0	2	0	1	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0020	1022	4	1	1	2	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0021	1022	3	3	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0022	1022	3	3	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0023	1022	3	3	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0024	1022	3	3	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0025	1019	3	0	0	3	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0026	1022	2	0	0	2	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0027	1019	2	0	0	2	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0028	1022	2	0	0	2	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0029	1022	2	0	0	2	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0030	1019	2	0	0	2	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0031	1022	2	0	0	2	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0032	1022	1	0	1	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0033	1022	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0034	1022	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0035	1022	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0036	1022	1	0	0	0	0	1	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0037	1019	1	0	1	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0038	1022	1	0	1	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0039	1019	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0040	1019	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0041	1019	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061