JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MINK1_chr17_4828340_4903061	0/0	t0042	1019	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0043	1019	1	0	1	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0044	1022	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	1/0	t0045	1019	1	0	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0046	1022	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0047	1022	1	0	0	0	0	1	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0048	1022	1	0	0	0	0	1	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0049	1019	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0050	1022	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0051	1022	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0052	1022	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0053	1022	1	0	1	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0054	1022	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0055	1022	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	t0056	1022	1	0	0	0	1	0	copy fasta	MINK1	chr17	4828340	4903061
MINPP1_chr10_87499893_87558461	1/1	t0001	1007	402	93	78	186	10	33	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	t0002	1007	3	0	0	0	0	3	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	t0003	1007	2	0	0	2	0	0	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	t0004	1007	2	2	0	0	0	0	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	t0005	1007	1	0	0	1	0	0	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	t0006	1007	1	1	0	0	0	0	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	t0007	1007	1	0	0	1	0	0	copy fasta	MINPP1	chr10	87499893	87558461
MIOS_chr7_7561884_7613932	0/1	t0001	2251	204	22	41	109	12	19	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0002	2251	27	3	5	13	0	6	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0003	2251	17	16	1	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0004	2251	9	0	0	9	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0005	2251	9	3	0	3	0	3	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0006	2248	9	9	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0007	2251	9	8	1	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0008	2251	5	4	1	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0009	2251	5	4	1	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0010	2251	4	4	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0011	2252	3	0	2	1	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0012	2251	3	2	1	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	1/0	t0013	2250	3	0	1	0	0	1	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0014	2251	2	0	0	2	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0015	2251	2	1	0	0	0	1	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0016	2251	2	0	1	0	0	1	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0017	2251	2	2	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0018	2251	2	2	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0019	2251	1	0	0	0	0	1	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0020	2251	1	0	0	1	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0021	2251	1	0	0	1	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0022	2251	1	0	0	0	0	1	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0023	2248	1	1	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0024	2251	1	0	0	0	0	1	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0025	2251	1	0	0	1	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0026	2252	1	1	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0027	2251	1	1	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0028	2251	1	1	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932