JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIOS_chr7_7561884_7613932	0/0	t0029	2250	1	1	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0030	2250	1	0	1	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	t0031	2251	1	1	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOX_chr22_50481859_50495648	0/0	t0001	832	119	28	19	58	0	14	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/1	t0002	832	104	5	30	57	2	9	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	1/0	t0003	832	104	31	19	29	10	14	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0004	832	37	22	5	5	3	2	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0005	831	27	1	5	13	1	7	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0006	831	16	0	0	15	0	1	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0007	832	5	4	1	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0008	832	3	0	0	3	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0009	832	3	0	0	3	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0010	832	3	0	1	0	2	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0011	832	3	2	1	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0012	832	1	0	0	0	0	1	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0013	832	1	0	0	1	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0014	832	1	0	1	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0015	832	1	0	0	0	0	1	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0016	860	1	0	1	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0017	832	1	0	0	1	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0018	832	1	1	0	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0019	832	1	0	1	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0020	832	1	0	0	1	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0021	832	1	0	0	0	0	1	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0022	832	1	1	0	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	t0023	832	1	1	0	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIPEP_chr13_23725189_23894400	1/1	t0001	240	300	89	54	119	6	30	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	t0002	240	5	0	0	5	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	t0003	240	1	1	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIP_chr12_56444502_56459657	0/1	t0001	1824	166	8	29	103	6	19	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0002	1823	100	5	11	63	6	15	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0003	1825	50	2	15	24	2	7	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0004	1823	14	13	1	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0005	1822	13	0	7	6	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0006	1824	12	6	3	2	1	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0007	1823	12	12	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	1/0	t0008	1823	11	10	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0009	1824	8	8	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0010	1825	7	6	1	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0011	1824	6	6	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0012	1823	5	0	0	5	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0013	1824	5	3	0	2	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0014	1824	4	4	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0015	1824	4	0	0	4	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0016	1823	3	1	2	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0017	1824	3	0	1	0	1	1	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0018	1824	2	2	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0019	1820	2	2	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0020	1823	1	0	1	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0021	1822	1	0	0	1	0	0	copy fasta	MIP	chr12	56444502	56459657