JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIP_chr12_56444502_56459657	0/0	t0022	1822	1	0	1	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0023	1841	1	0	0	1	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0024	1842	1	0	0	1	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0025	1824	1	1	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0026	1820	1	1	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0027	1825	1	1	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	t0028	1825	1	1	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIS12_chr17_5481566_5495811	0/0	t0001	1885	147	5	16	112	4	10	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0002	1889	87	14	3	58	0	12	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	1/0	t0003	1885	73	9	37	8	5	13	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0004	1885	38	12	5	17	2	2	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/1	t0005	1889	34	18	6	3	4	2	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0006	1885	14	7	5	1	0	1	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0007	1889	7	7	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0008	1889	7	0	0	7	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0009	1885	6	6	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0010	1885	5	5	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0011	1893	3	2	0	0	1	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0012	1889	3	0	0	3	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0013	1889	2	1	1	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0014	1889	2	2	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0015	1889	1	1	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0016	1885	1	1	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0017	1889	1	1	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0018	1889	1	1	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0019	1889	1	0	0	1	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0020	1865	1	0	0	0	0	1	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0021	1885	1	0	0	0	0	1	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0022	1885	1	1	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0023	1889	1	0	1	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	t0024	1889	1	1	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS18A_chr21_32263228_32284049	1/1	t0001	845	182	15	43	99	7	16	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	t0002	847	130	25	15	72	2	16	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	t0003	846	31	19	2	5	0	5	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	t0004	846	27	11	6	7	1	2	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	t0005	846	14	12	2	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	t0006	846	11	9	2	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	t0007	845	3	3	0	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	t0008	845	3	2	0	0	0	1	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	t0009	847	1	0	0	1	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	t0010	846	1	1	0	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	t0011	846	1	1	0	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18BP1_chr14_45198190_45258202	0/1	t0001	1180	217	62	39	87	8	20	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	t0002	1182	12	12	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	t0003	1181	6	5	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	1/0	t0004	1179	2	0	0	0	0	1	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	t0005	1180	2	2	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	t0006	1180	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	t0007	1180	1	0	0	1	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	t0008	1180	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202