JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIS18BP1_chr14_45198190_45258202	0/0	t0009	1180	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	t0010	1180	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	t0011	1180	1	0	0	0	0	1	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	t0012	1180	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MISFA_chr11_18594789_18608883	1/1	t0001	269	429	96	75	197	16	43	copy fasta	MISFA	chr11	18594789	18608883
MISFA_chr11_18594789_18608883	0/0	t0002	269	17	0	1	16	0	0	copy fasta	MISFA	chr11	18594789	18608883
MISFA_chr11_18594789_18608883	0/0	t0003	269	2	0	0	0	2	0	copy fasta	MISFA	chr11	18594789	18608883
MISFA_chr11_18594789_18608883	0/0	t0004	269	2	0	1	0	0	1	copy fasta	MISFA	chr11	18594789	18608883
MISFA_chr11_18594789_18608883	0/0	t0005	269	1	0	1	0	0	0	copy fasta	MISFA	chr11	18594789	18608883
MISFA_chr11_18594789_18608883	0/0	t0006	269	1	0	0	1	0	0	copy fasta	MISFA	chr11	18594789	18608883
MISP3_chr19_14067786_14080062	1/1	t0001	864	321	48	68	153	13	37	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	t0002	865	40	27	3	4	1	5	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	t0003	864	9	9	0	0	0	0	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	t0004	864	2	0	0	0	0	2	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	t0005	864	2	2	0	0	0	0	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	t0006	864	1	0	1	0	0	0	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	t0007	864	1	0	0	1	0	0	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	t0008	864	1	1	0	0	0	0	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	t0009	865	1	1	0	0	0	0	copy fasta	MISP3	chr19	14067786	14080062
MISP_chr19_746112_769318	1/1	t0001	846	307	60	55	144	14	32	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0002	846	43	0	2	41	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0003	846	30	0	16	6	2	6	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0004	846	15	14	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0005	846	13	12	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0006	846	10	6	3	0	0	1	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0007	846	3	1	2	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0008	846	2	2	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0009	846	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0010	846	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0011	846	1	0	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0012	846	1	0	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0013	846	1	0	0	0	0	1	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0014	846	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0015	838	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0016	838	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	t0017	846	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MITD1_chr2_99164263_99186058	1/1	t0001	190	409	89	80	182	14	42	copy fasta	MITD1	chr2	99164263	99186058
MITD1_chr2_99164263_99186058	0/0	t0002	190	2	2	0	0	0	0	copy fasta	MITD1	chr2	99164263	99186058
MITD1_chr2_99164263_99186058	0/0	t0003	190	2	0	0	0	0	2	copy fasta	MITD1	chr2	99164263	99186058
MITD1_chr2_99164263_99186058	0/0	t0004	190	1	1	0	0	0	0	copy fasta	MITD1	chr2	99164263	99186058
MITF_chr3_69734464_69973332	1/1	t0001	3219	83	20	21	26	1	13	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0002	3221	47	19	10	13	0	5	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0003	3219	18	15	3	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0004	3219	6	0	2	1	1	2	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0005	3219	5	0	1	3	0	1	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0006	3219	3	0	1	0	0	2	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0007	3219	3	1	0	2	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0008	3219	2	2	0	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0009	3219	2	0	2	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0010	3219	2	0	0	2	0	0	copy fasta	MITF	chr3	69734464	69973332