JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MITF_chr3_69734464_69973332	0/0	t0011	3221	1	0	0	0	0	1	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0012	3219	1	1	0	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0013	3219	1	1	0	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0014	3219	1	1	0	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0015	3219	1	0	0	1	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0016	3219	1	1	0	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	t0017	3219	1	1	0	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69931592_69973332	1/1	t0001	3216	198	29	41	99	7	20	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0002	3218	107	31	15	48	4	9	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0003	3216	27	23	4	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0004	3216	14	1	2	10	0	1	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0005	3216	8	1	0	7	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0006	3216	5	0	2	1	0	2	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0007	3216	4	0	0	4	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0008	3216	4	0	0	4	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0009	3216	3	0	1	0	0	2	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0010	3216	2	2	0	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0011	3216	2	2	0	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0012	3216	2	2	0	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0013	3216	2	0	2	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0014	3218	1	0	0	0	0	1	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0015	3218	1	0	1	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0016	3218	1	0	0	0	0	1	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0017	3216	1	1	0	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0018	3216	1	0	0	0	1	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0019	3216	1	0	0	1	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0020	3216	1	1	0	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	t0021	3216	1	1	0	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MIX23_chr3_122354591_122388231	0/0	t0001	287	99	20	24	40	3	12	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0002	278	80	3	12	55	2	8	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0003	290	52	6	1	43	0	2	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0004	287	35	9	2	17	0	7	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/1	t0005	291	20	1	1	11	2	4	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0006	288	18	4	3	8	3	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	1/0	t0007	286	17	11	1	3	0	1	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0008	288	15	13	2	0	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0009	279	13	2	7	0	0	4	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0010	275	12	0	5	4	2	1	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0011	286	7	7	0	0	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0012	290	7	7	0	0	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0013	288	5	0	0	4	0	1	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0014	276	4	0	3	1	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0015	284	4	0	2	0	2	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0016	285	4	3	0	1	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0017	289	4	1	1	2	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0018	274	3	2	1	0	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0019	277	3	0	0	3	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0020	287	3	0	1	0	1	1	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0021	276	2	0	1	0	0	1	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0022	283	2	2	0	0	0	0	copy fasta	MIX23	chr3	122354591	122388231