JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MIX23_chr3_122354591_122388231	0/0	t0023	274	1	0	1	0	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0024	276	1	0	0	0	1	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0025	289	1	1	0	0	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0026	288	1	0	0	1	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0027	287	1	0	0	1	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0028	288	1	1	0	0	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0029	287	1	1	0	0	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0030	291	1	0	0	1	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0031	289	1	1	0	0	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0032	290	1	0	0	1	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIX23_chr3_122354591_122388231	0/0	t0033	295	1	1	0	0	0	0	copy fasta	MIX23	chr3	122354591	122388231
MIXL1_chr1_226218664_226232060	0/0	t0001	1269	130	19	23	71	6	11	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0002	1260	96	21	23	34	3	15	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	1/1	t0003	1267	74	11	16	36	1	8	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0004	1268	35	11	7	13	1	3	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0005	1270	23	6	4	12	1	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0006	1266	15	7	2	2	2	2	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0007	1259	13	1	1	8	0	3	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0008	1267	11	0	0	8	0	3	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0009	1268	10	0	0	8	0	2	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0010	1265	6	6	0	0	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0011	1268	3	0	0	3	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0012	1267	2	0	0	2	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0013	1269	2	2	0	0	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0014	1268	2	2	0	0	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0015	1260	1	0	0	0	0	1	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0016	1267	1	0	0	1	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0017	1260	1	1	0	0	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0018	1269	1	0	0	1	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0019	1269	1	1	0	0	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	t0020	1266	1	0	0	1	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MKI67_chr10_128091659_128131423	0/1	t0001	2946	96	22	15	42	3	13	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0002	2938	69	8	21	31	2	7	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0003	2938	37	5	12	9	4	7	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0004	2946	27	2	9	14	0	2	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0005	2938	26	0	4	21	0	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0006	2938	24	6	0	16	0	2	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	1/0	t0007	2946	18	5	1	9	2	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0008	2938	15	13	2	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0009	2946	12	0	0	11	0	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0010	2938	11	0	0	11	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0011	2938	6	3	0	1	0	2	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0012	2946	6	3	0	1	1	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0013	2946	5	0	2	0	1	2	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0014	2938	4	0	0	4	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0015	2938	3	1	1	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0016	2938	3	2	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0017	2938	2	0	0	2	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0018	2938	2	0	0	1	0	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0019	2938	2	2	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423