JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MKI67_chr10_128091659_128131423	0/0	t0020	2938	2	0	1	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0021	2946	2	2	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0022	2946	2	0	2	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0023	2946	2	0	2	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0024	2946	2	2	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0025	2946	2	2	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0026	2946	2	2	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0027	2938	1	0	0	0	1	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0028	2938	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0029	2938	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0030	2938	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0031	2938	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0032	2938	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0033	2938	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0034	2938	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0035	2938	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0036	2938	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0037	2938	1	0	0	0	0	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0038	2938	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0039	2938	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0040	2938	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0041	2938	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0042	2938	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0043	2938	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0044	2938	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0045	2938	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0046	2938	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0047	2946	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0048	2946	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0049	2946	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0050	2946	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0051	2946	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	t0052	2946	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKKS_chr20_10396009_10439222	0/1	t0001	5002	101	24	23	43	2	8	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	1/0	t0002	5002	88	14	9	50	3	11	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0003	5000	41	1	2	31	1	6	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0004	5002	38	7	12	2	5	12	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0005	5010	27	2	6	18	0	1	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0006	5002	13	0	0	13	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0007	5002	12	11	1	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0008	5002	9	0	7	0	1	1	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0009	5002	5	0	0	5	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0010	5000	4	4	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0011	5002	4	4	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0012	5002	4	0	0	4	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0013	5002	3	3	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0014	5000	3	3	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0015	5000	3	3	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0016	5002	3	0	0	3	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0017	5012	3	0	0	0	0	3	copy fasta	MKKS	chr20	10396009	10439222