JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MKKS_chr20_10396009_10439222	0/0	t0018	5002	2	1	1	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0019	5002	2	2	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0020	5002	2	0	2	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0021	5010	2	2	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0022	5000	1	1	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0023	5000	1	0	0	0	0	1	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0024	5001	1	1	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0025	5000	1	1	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0026	5000	1	0	0	1	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0027	5000	1	0	0	1	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0028	5000	1	0	1	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0029	5000	1	1	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0030	5000	1	0	0	0	0	1	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0031	5002	1	1	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0032	5002	1	0	0	1	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0033	5002	1	1	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0034	5002	1	0	0	1	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0035	5002	1	0	0	0	1	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0036	5002	1	1	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0037	5002	1	1	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0038	5002	1	0	1	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0039	5002	1	0	0	1	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0040	5010	1	0	0	0	1	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0041	5012	1	0	1	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	t0042	5012	1	1	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKLN1_chr7_131322876_131501632	0/0	t0001	8928	81	20	17	32	5	7	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/1	t0002	8931	72	9	10	39	2	11	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0003	8935	34	3	3	21	1	6	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0004	8915	11	0	0	11	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0005	8929	9	0	7	1	0	1	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0006	8928	7	0	0	7	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0007	8934	7	4	0	2	0	1	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0008	8935	6	6	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0009	8929	6	1	2	1	0	2	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0010	8931	5	4	1	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0011	8931	4	0	2	0	1	1	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0012	8932	3	1	0	1	0	1	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0013	8935	3	0	0	2	0	1	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0014	8930	3	0	1	2	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0015	8919	3	3	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0016	8928	3	1	0	1	0	1	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0017	8928	3	0	1	0	2	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0018	8934	3	3	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0019	8933	3	3	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0020	8933	2	0	0	2	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0021	8935	2	0	0	0	0	2	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0022	8931	2	2	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0023	8931	2	0	2	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	1/0	t0024	8929	2	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0025	8928	2	2	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632