JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MKLN1_chr7_131322876_131501632	0/0	t0026	8928	2	1	1	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0027	8928	2	0	0	2	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0028	8928	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0029	8928	1	0	1	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0030	8935	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0031	8930	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0032	8930	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0033	8935	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0034	8932	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0035	8931	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0036	8928	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0037	8931	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0038	8931	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0039	8931	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0040	8931	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0041	8931	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0042	8931	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0043	8931	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0044	8931	1	0	1	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0045	8934	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0046	8934	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0047	8928	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0048	8928	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0049	8928	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0050	8928	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0051	8915	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0052	8928	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0053	8928	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0054	8933	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0055	8936	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0056	8934	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0057	8933	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0058	8933	1	0	1	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0059	8928	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0060	8934	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0061	8932	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0062	8931	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0063	8931	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0064	8931	1	0	0	1	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	t0065	8928	1	0	0	0	1	0	copy fasta	MKLN1	chr7	131322876	131501632
MKNK1_chr1_46552407_46609268	1/0	t0001	1423	228	66	35	94	6	26	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/1	t0002	1423	92	5	19	52	3	12	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	t0003	1423	12	0	2	7	0	3	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	t0004	1423	6	6	0	0	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	t0005	1423	2	0	1	0	1	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	t0006	1423	1	0	1	0	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	t0007	1407	1	0	0	1	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	t0008	1423	1	0	0	0	0	1	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	t0009	1423	1	0	0	1	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	t0010	1423	1	1	0	0	0	0	copy fasta	MKNK1	chr1	46552407	46609268