JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MKNK1_chr1_46552407_46609268	0/0	t0011	1423	1	0	0	1	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK2_chr19_2032471_2056244	0/0	t0001	2388	83	0	24	40	2	17	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0002	2387	71	30	7	26	1	7	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0003	2387	43	3	0	38	1	1	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0004	2389	25	0	4	18	1	2	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/1	t0005	2389	22	3	10	1	1	6	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0006	2386	11	2	3	5	1	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0007	2389	11	0	4	2	1	4	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0008	2388	9	0	0	9	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0009	2388	8	8	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	1/0	t0010	2388	8	0	1	3	3	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0011	2387	5	5	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0012	2388	5	0	0	5	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0013	2388	4	0	0	4	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0014	2388	4	0	0	3	0	1	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0015	2387	4	4	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0016	2387	4	0	0	0	0	4	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0017	2389	4	0	1	3	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0018	2388	4	0	3	0	1	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0019	2389	4	0	3	0	0	1	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0020	2388	4	0	2	1	1	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0021	2390	4	2	1	0	0	1	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0022	2388	3	0	0	3	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0023	2388	3	0	1	1	1	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0024	2389	3	0	0	3	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0025	2388	3	0	1	2	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0026	2389	3	3	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0027	2393	3	3	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0028	2388	2	2	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0029	2388	2	2	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0030	2389	2	0	1	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0031	2387	2	0	0	2	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0032	2387	2	0	0	0	0	2	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0033	2388	2	2	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0034	2388	2	2	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0035	2387	2	1	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0036	2389	2	0	0	2	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0037	2390	2	0	0	1	0	1	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0038	2389	2	2	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0039	2387	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0040	2387	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0041	2386	1	0	0	0	0	1	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0042	2387	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0043	2386	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0044	2388	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0045	2387	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0046	2387	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0047	2388	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0048	2388	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0049	2389	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244