JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MKNK2_chr19_2032471_2056244	0/0	t0050	2387	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0051	2387	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0052	2387	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0053	2388	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0054	2388	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0055	2387	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0056	2387	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0057	2387	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0058	2388	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0059	2387	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0060	2389	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0061	2387	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0062	2387	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0063	2387	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0064	2387	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0065	2389	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0066	2387	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0067	2387	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0068	2389	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0069	2388	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0070	2389	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0071	2388	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0072	2388	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0073	2390	1	0	0	0	1	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0074	2389	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0075	2389	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0076	2389	1	0	0	0	1	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0077	2388	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0078	2389	1	1	0	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	t0079	2388	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKRN1_chr7_140448033_140484505	1/1	t0001	1646	327	50	69	147	16	43	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0002	1647	76	34	5	30	2	5	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0003	1646	11	0	0	11	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0004	1646	7	6	1	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0005	1646	3	0	0	3	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0006	1646	2	0	0	2	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0007	1646	2	2	0	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0008	1647	1	0	0	1	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0009	1646	1	0	0	1	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0010	1646	1	0	0	1	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0011	1646	1	1	0	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0012	1646	1	0	1	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	t0013	1646	1	1	0	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN2OS_chr3_12534776_12550499	1/0	t0001	453	175	28	33	79	10	24	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/1	t0002	453	164	39	30	81	1	12	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	t0003	453	47	22	13	3	5	4	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	t0004	453	4	4	0	0	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	t0005	453	2	2	0	0	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	t0006	453	1	1	0	0	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	t0007	453	1	1	0	0	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499