JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MKRN2OS_chr3_12534776_12550499	0/0	t0008	453	1	1	0	0	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	t0009	453	1	0	0	1	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2_chr3_12552087_12588713	1/0	t0001	1525	140	11	35	70	6	17	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0002	1525	71	13	25	20	5	8	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0003	1525	45	22	11	7	2	3	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0004	1525	18	18	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0005	1525	17	15	2	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0006	1525	7	3	4	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0007	1525	4	4	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0008	1526	4	0	0	4	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0009	1525	3	2	0	0	0	1	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0010	1525	3	0	1	0	1	1	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0011	1525	2	2	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0012	1525	2	0	0	0	0	2	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0013	1525	2	2	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0014	1525	2	2	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0015	1525	1	1	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0016	1525	1	0	0	1	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/1	t0017	1525	1	0	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0018	1525	1	0	1	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0019	1525	1	0	1	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0020	1525	1	1	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0021	1525	1	1	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	t0022	1525	1	1	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN3_chr15_23560674_23573044	1/1	t0001	848	418	88	76	198	14	40	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	t0002	848	1	0	0	1	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	t0003	848	1	0	0	1	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKS1_chr17_58200441_58224255	1/0	t0001	664	271	77	37	119	9	28	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/1	t0002	664	36	1	6	21	3	4	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	t0003	664	7	7	0	0	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	t0004	664	5	3	1	0	1	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	t0005	664	4	0	0	4	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	t0006	664	2	2	0	0	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	t0007	664	1	0	0	0	1	0	copy fasta	MKS1	chr17	58200441	58224255
MKX_chr10_27667874_27750819	1/1	t0001	2551	90	21	19	32	4	12	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0002	2549	62	1	6	49	2	4	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0003	2551	37	7	11	13	2	4	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0004	2549	28	0	3	22	0	3	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0005	2549	28	0	4	22	0	2	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0006	2551	23	19	1	3	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0007	2549	17	1	1	14	0	1	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0008	2551	12	2	5	1	2	2	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0009	2551	10	8	2	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0010	2549	8	0	0	8	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0011	2551	6	3	0	2	0	1	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0012	2551	4	4	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0013	2550	3	3	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0014	2551	3	3	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0015	2551	2	1	1	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0016	2549	2	0	2	0	0	0	copy fasta	MKX	chr10	27667874	27750819