JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MKX_chr10_27667874_27750819	0/0	t0017	2551	2	2	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0018	2549	1	0	0	1	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0019	2551	1	0	0	1	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0020	2551	1	0	0	0	0	1	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0021	2549	1	0	0	1	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0022	2551	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0023	2551	1	0	1	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0024	2550	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0025	2551	1	0	0	1	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0026	2551	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0027	2549	1	0	0	1	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0028	2549	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0029	2549	1	0	0	1	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0030	2551	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0031	2550	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0032	2551	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0033	2551	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	t0034	2551	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MLANA_chr9_5885889_5915606	0/1	t0001	1972	188	26	33	103	8	17	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	1/0	t0002	1972	174	28	27	90	5	23	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0003	1972	28	26	2	0	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0004	1972	6	5	1	0	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0005	1972	3	0	0	3	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0006	1971	3	0	0	0	0	3	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0007	1972	3	0	3	0	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0008	1972	2	1	1	0	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0009	1972	2	1	0	1	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0010	1972	2	0	1	0	1	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0011	1972	2	2	0	0	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0012	1972	2	2	0	0	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0013	1972	2	0	0	0	0	2	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0014	1972	1	0	0	1	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0015	1972	1	0	0	1	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0016	1972	1	0	1	0	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0017	1972	1	1	0	0	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0018	1972	1	0	0	1	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0019	1972	1	0	1	0	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	t0020	1972	1	0	0	0	0	1	copy fasta	MLANA	chr9	5885889	5915606
MLC1_chr22_50054391_50090426	1/1	t0001	2324	93	30	7	47	1	6	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0002	2324	49	0	9	33	3	4	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0003	2324	14	1	9	0	1	3	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0004	2324	9	0	4	1	2	2	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0005	2324	7	6	1	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0006	2324	7	1	5	1	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0007	2230	5	0	2	1	0	2	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0008	2324	4	0	3	0	0	1	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0009	2273	4	3	1	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0010	2275	2	0	2	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0011	2324	2	2	0	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0012	2273	2	0	2	0	0	0	copy fasta	MLC1	chr22	50054391	50090426