JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLC1_chr22_50054391_50090426	0/0	t0013	2273	2	1	1	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0014	2273	1	0	1	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0015	2324	1	0	0	1	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0016	2274	1	0	0	1	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0017	2324	1	0	0	0	1	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0018	2324	1	1	0	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0019	2325	1	0	0	1	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0020	2324	1	0	0	1	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0021	2324	1	1	0	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0022	2324	1	1	0	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0023	2324	1	0	1	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0024	2324	1	0	0	1	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	t0025	2324	1	1	0	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLEC_chr12_120682149_120706859	0/0	t0001	5463	127	2	27	79	9	10	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/1	t0002	5463	66	22	17	14	3	9	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0003	5463	52	0	0	49	0	3	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0004	5463	26	23	2	0	0	1	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0005	5463	16	1	2	12	1	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0006	5463	16	0	0	16	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0007	5463	13	6	1	0	0	6	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0008	5463	12	1	7	0	2	2	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0009	5463	12	4	3	5	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0010	5463	9	9	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0011	5463	7	0	4	0	2	1	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0012	5467	4	0	0	0	0	4	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0013	5463	4	4	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0014	5463	3	3	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	1/0	t0015	5463	3	0	0	0	1	1	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0016	5463	2	2	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0017	5463	2	2	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0018	5463	2	2	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0019	5463	2	1	1	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0020	5463	2	0	0	2	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0021	5463	2	0	0	2	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0022	5463	2	2	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0023	5463	1	1	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0024	5463	1	1	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0025	5463	1	1	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0026	5463	1	0	0	0	0	1	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0027	5463	1	0	1	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0028	5463	1	0	1	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0029	5467	1	0	1	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0030	5463	1	1	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0031	5463	1	1	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0032	5463	1	0	1	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0033	5463	1	1	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0034	5463	1	0	1	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0035	5463	1	1	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0036	5463	1	1	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0037	5463	1	0	0	0	0	1	copy fasta	MLEC	chr12	120682149	120706859