JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLEC_chr12_120682149_120706859	0/0	t0038	5463	1	0	0	1	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0039	5463	1	0	1	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0040	5463	1	0	0	0	0	1	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0041	5463	1	0	0	1	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0042	5463	1	0	0	1	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0043	5463	1	0	0	1	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0044	5463	1	0	0	1	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0045	5463	1	1	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	t0046	5463	1	1	0	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLF1_chr3_158566194_158611456	1/1	t0001	1362	134	11	22	76	7	16	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0002	1362	78	9	10	45	4	10	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0003	1362	67	26	14	15	4	8	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0004	1362	53	10	10	28	2	3	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0005	1362	17	17	0	0	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0006	1362	14	2	9	0	0	3	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0007	1362	7	7	0	0	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0008	1362	2	2	0	0	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0009	1362	2	2	0	0	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0010	1362	2	1	1	0	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0011	1362	1	1	0	0	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0012	1362	1	0	0	0	1	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0013	1362	1	0	0	1	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	t0014	1362	1	0	0	1	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF2_chr12_6742996_6758141	1/1	t0001	809	268	42	44	136	9	35	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0002	810	45	7	8	27	1	2	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0003	809	40	4	12	16	4	4	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0004	809	18	0	3	13	1	1	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0005	809	9	7	1	0	1	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0006	810	8	7	1	0	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0007	809	7	5	2	0	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0008	810	6	5	1	0	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0009	809	6	0	0	6	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0010	809	5	0	4	1	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0011	809	4	3	1	0	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0012	809	2	2	0	0	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0013	810	2	2	0	0	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0014	810	1	0	1	0	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0015	809	1	1	0	0	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0016	809	1	0	0	1	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0017	809	1	1	0	0	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0018	809	1	1	0	0	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	t0019	810	1	1	0	0	0	0	copy fasta	MLF2	chr12	6742996	6758141
MLH1_chr3_36988518_37055846	1/1	t0001	224	273	77	54	98	10	32	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	t0002	221	6	4	2	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	t0003	220	3	3	0	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH3_chr14_75008775_75056467	1/1	t0001	3459	144	34	38	50	3	17	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0002	3458	79	21	16	23	3	16	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0003	3459	13	13	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0004	3459	5	1	0	3	0	1	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0005	3458	4	3	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467