JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLH3_chr14_75008775_75056467	0/0	t0006	3459	2	0	0	2	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0007	3458	2	2	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0008	3459	1	0	0	1	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0009	3458	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0010	3459	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0011	3458	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0012	3458	1	0	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0013	3459	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0014	3459	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0015	3459	1	0	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0016	3459	1	0	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0017	3458	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0018	3458	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0019	3458	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	t0020	3458	1	0	0	1	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLIP_chr6_54106443_54271280	1/1	t0001	363	176	23	37	87	7	20	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	t0002	362	50	33	11	1	1	4	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	t0003	363	17	17	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	t0004	363	4	0	0	2	0	2	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	t0005	363	1	1	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLKL_chr16_74666855_74705862	0/0	t0001	1062	275	57	34	144	11	29	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	1/1	t0002	1062	89	10	25	40	3	9	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0003	1062	38	6	16	10	2	4	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0004	1062	10	10	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0005	1062	7	0	3	0	0	4	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0006	1062	6	6	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0007	1062	4	4	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0008	1062	1	0	0	1	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0009	1062	1	1	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0010	1062	1	0	0	0	0	1	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0011	1062	1	0	0	0	0	1	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0012	1062	1	1	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0013	1062	1	0	0	1	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0014	1062	1	1	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0015	1062	1	1	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	t0016	1062	1	1	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLLT10_chr10_21529232_21748630	1/0	t0001	1937	115	29	36	30	4	15	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0002	1938	15	10	3	0	1	1	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/1	t0003	1939	14	2	9	1	0	1	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0004	1937	9	5	2	0	0	2	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0005	1940	9	2	2	3	1	1	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0006	1937	6	6	0	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0007	1938	5	5	0	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0008	1939	4	2	0	1	0	1	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0009	1938	3	2	0	1	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0010	1940	2	2	0	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0011	1937	2	2	0	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0012	1937	1	0	1	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0013	1938	1	1	0	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0014	1939	1	1	0	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630