JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLLT10_chr10_21529232_21748630	0/0	t0015	1938	1	0	0	0	0	1	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0016	1937	1	0	0	1	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0017	1937	1	0	1	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0018	1938	1	1	0	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	t0019	1937	1	0	0	1	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT11_chr1_151055397_151074544	0/1	t0001	2211	203	31	38	99	6	28	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	1/0	t0002	2211	95	34	14	30	8	8	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0003	2211	24	15	7	0	1	1	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0004	2211	16	0	0	16	0	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0005	2211	10	1	5	2	2	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0006	2211	5	4	1	0	0	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0007	2211	3	3	0	0	0	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0008	2211	3	0	0	0	1	2	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0009	2211	3	3	0	0	0	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0010	2211	2	0	0	2	0	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0011	2211	2	2	0	0	0	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0012	2211	1	0	0	1	0	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0013	2211	1	0	0	1	0	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0014	2211	1	0	1	0	0	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0015	2211	1	0	0	1	0	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0016	2211	1	1	0	0	0	0	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	t0017	2211	1	0	0	0	0	1	copy fasta	MLLT11	chr1	151055397	151074544
MLLT1_chr19_6205381_6284975	0/0	t0001	2856	135	26	21	61	5	22	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/1	t0002	2856	48	15	21	1	2	8	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	1/0	t0003	2853	33	3	6	18	0	5	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0004	2855	10	9	1	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0005	2856	9	8	1	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0006	2850	4	0	1	2	1	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0007	2853	3	2	1	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0008	2853	3	2	1	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0009	2856	3	3	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0010	2847	2	0	1	1	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0011	2856	2	2	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0012	2856	2	1	0	1	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0013	2856	2	2	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0014	2856	2	2	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0015	2856	2	2	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0016	2856	2	0	0	2	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0017	2855	2	2	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0018	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0019	2841	1	0	0	0	0	1	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0020	2844	1	0	0	0	0	1	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0021	2856	1	0	0	0	0	1	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0022	2856	1	0	0	1	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0023	2856	1	0	0	1	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0024	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0025	2853	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0026	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0027	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0028	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975