JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLLT1_chr19_6205381_6284975	0/0	t0029	2856	1	0	0	1	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0030	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0031	2856	1	0	0	1	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0032	2856	1	0	0	1	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0033	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0034	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0035	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0036	2859	1	0	0	1	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0037	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0038	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	t0039	2856	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT3_chr9_20336669_20627499	0/0	t0001	5028	19	1	4	13	0	1	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0002	5027	17	8	2	7	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	1/0	t0003	5018	14	1	5	4	1	2	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/1	t0004	5019	11	0	5	2	0	3	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0005	5028	10	8	2	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0006	5027	10	0	0	5	0	5	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0007	5027	8	0	3	4	1	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0008	5028	7	2	4	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0009	5016	7	0	1	4	0	2	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0010	5029	6	0	0	6	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0011	5027	6	6	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0012	5028	4	4	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0013	5021	4	1	1	2	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0014	5021	4	3	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0015	5021	3	3	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0016	5017	3	0	0	3	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0017	5032	2	0	0	2	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0018	5021	2	2	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0019	5031	2	1	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0020	5008	2	1	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0021	5019	2	0	0	2	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0022	5021	2	0	2	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0023	5028	2	0	0	0	0	2	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0024	5027	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0025	5020	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0026	5029	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0027	5031	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0028	5020	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0029	5028	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0030	5015	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0031	5021	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0032	5027	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0033	5030	1	0	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0034	5047	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0035	5003	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0036	5029	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0037	5029	1	0	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0038	5028	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0039	5035	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499