JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLLT3_chr9_20336669_20627499	0/0	t0040	5036	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0041	5041	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0042	5027	1	0	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0043	5021	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0044	5022	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0045	5028	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0046	5031	1	0	0	0	0	1	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0047	5021	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0048	5023	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0049	5027	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0050	5027	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0051	5019	1	0	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0052	5018	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0053	5028	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0054	5022	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0055	5016	1	0	0	0	0	1	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0056	5017	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0057	5012	1	0	0	0	0	1	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0058	5032	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0059	5023	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0060	5028	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0061	5022	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	t0062	5016	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT6_chr17_38700273_38734795	0/1	t0001	4558	94	11	20	41	5	16	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0002	4557	30	18	2	8	1	1	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0003	4561	26	3	4	19	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0004	4557	7	0	0	2	0	5	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0005	4560	7	0	1	5	0	1	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0006	4555	6	6	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0007	4559	6	6	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0008	4558	6	0	0	6	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0009	4556	6	4	2	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0010	4559	6	0	3	3	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0011	4562	6	1	2	1	0	2	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0012	4559	6	0	3	2	0	1	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0013	4560	5	5	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0014	4554	5	0	5	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0015	4558	4	3	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0016	4560	4	0	0	4	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0017	4559	4	0	0	3	1	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0018	4555	3	2	0	0	1	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0019	4557	3	0	0	3	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0020	4557	3	3	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0021	4558	3	3	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0022	4562	3	3	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0023	4562	3	0	0	3	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0024	4554	2	2	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0025	4561	2	1	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0026	4556	2	1	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0027	4559	2	0	0	2	0	0	copy fasta	MLLT6	chr17	38700273	38734795