JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLLT6_chr17_38700273_38734795	0/0	t0028	4561	2	0	1	0	1	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0029	4558	2	0	0	1	0	1	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0030	4557	2	1	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0031	4563	2	0	1	0	0	1	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0032	4538	2	2	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0033	4557	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0034	4556	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0035	4557	1	0	0	0	1	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0036	4558	1	0	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0037	4557	1	0	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0038	4557	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0039	4557	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0040	4557	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0041	4559	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0042	4559	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0043	4561	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0044	4556	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0045	4558	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0046	4555	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0047	4559	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0048	4557	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0049	4557	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0050	4558	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0051	4559	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0052	4559	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0053	4558	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0054	4558	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0055	4554	1	0	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0056	4554	1	0	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0057	4559	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0058	4557	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0059	4558	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0060	4558	1	0	0	0	0	1	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0061	4558	1	0	0	0	0	1	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0062	4558	1	0	0	0	0	1	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0063	4558	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0064	4559	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0065	4558	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0066	4561	1	0	0	0	0	1	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0067	4563	1	0	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0068	4555	1	0	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0069	4555	1	0	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0070	4561	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0071	4559	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0072	4560	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0073	4562	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0074	4559	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0075	4555	1	0	0	0	0	1	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0076	4561	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0077	4561	1	0	0	0	0	1	copy fasta	MLLT6	chr17	38700273	38734795