JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLLT6_chr17_38700273_38734795	0/0	t0078	4560	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	t0079	4540	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLN_chr6_33789673_33809003	1/1	t0001	211	374	78	73	161	18	42	copy fasta	MLN	chr6	33789673	33809003
MLN_chr6_33789673_33809003	0/0	t0002	211	51	19	3	27	0	2	copy fasta	MLN	chr6	33789673	33809003
MLN_chr6_33789673_33809003	0/0	t0003	211	7	1	2	2	0	2	copy fasta	MLN	chr6	33789673	33809003
MLN_chr6_33789673_33809003	0/0	t0004	211	2	0	0	2	0	0	copy fasta	MLN	chr6	33789673	33809003
MLPH_chr2_237482251_237560322	1/0	t0001	1942	144	29	29	62	9	14	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0002	1942	77	26	7	33	0	11	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0003	1942	25	15	4	6	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/1	t0004	1942	14	2	2	8	1	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0005	1942	9	8	1	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0006	1942	2	0	1	0	1	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0007	1942	2	0	0	2	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0008	1942	2	2	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0009	1942	1	0	0	0	1	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0010	1942	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0011	1942	1	0	1	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0012	1942	1	0	0	0	0	1	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0013	1942	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0014	1916	1	0	0	1	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0015	1942	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0016	1942	1	0	1	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0017	1942	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0018	1942	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	t0019	1942	1	1	0	0	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLST8_chr16_2200454_2214453	0/0	t0001	691	216	86	35	72	4	19	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0002	690	153	1	42	81	12	17	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0003	690	23	0	2	16	2	3	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0004	690	18	0	0	18	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0005	691	16	1	2	10	0	3	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0006	691	4	0	3	0	0	1	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0007	691	2	0	0	2	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0008	691	2	2	0	0	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0009	691	2	2	0	0	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0010	691	2	2	0	0	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0011	691	1	0	0	0	0	1	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0012	691	1	0	0	1	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0013	691	1	1	0	0	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0014	691	1	1	0	0	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0015	690	1	0	0	1	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0016	690	1	1	0	0	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0017	690	1	1	0	0	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	t0018	691	1	0	0	1	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLXIPL_chr7_73588202_73629522	1/0	t0001	694	234	75	61	57	9	31	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/1	t0002	694	26	5	2	15	1	2	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	t0003	694	11	0	3	0	4	4	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	t0004	694	3	3	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	t0005	694	1	1	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	t0006	694	1	0	0	0	0	1	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIP_chr12_122073756_122152344	0/0	t0001	5629	71	12	14	24	6	15	copy fasta	MLXIP	chr12	122073756	122152344