JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLXIP_chr12_122073756_122152344	0/0	t0002	5621	49	5	11	29	1	3	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0003	5629	47	7	15	17	3	5	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0004	5629	14	0	2	10	1	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0005	5609	14	8	2	3	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0006	5629	11	0	1	10	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0007	5630	9	0	1	7	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0008	5629	8	0	7	0	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/1	t0009	5629	6	0	3	0	1	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0010	5630	6	0	0	6	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0011	5629	6	5	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0012	5625	5	5	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0013	5631	5	5	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0014	5630	5	0	1	3	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0015	5628	5	1	2	1	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0016	5621	4	0	2	1	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0017	5621	4	4	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0018	5631	4	0	3	0	1	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0019	5626	3	2	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0020	5630	3	2	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0021	5629	3	2	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0022	5627	3	0	0	0	0	3	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0023	5621	2	0	0	2	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0024	5631	2	2	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0025	5628	2	0	0	2	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0026	5621	2	2	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0027	5632	2	2	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0028	5630	2	2	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0029	5630	2	2	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0030	5629	2	0	2	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0031	5629	2	0	0	2	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0032	5629	2	0	0	1	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0033	5630	2	2	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0034	5631	2	2	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0035	5621	2	0	0	0	0	2	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0036	5629	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0037	5631	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0038	5621	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0039	5621	1	0	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0040	5621	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0041	5621	1	0	0	0	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0042	5630	1	0	0	0	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0043	5629	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0044	5629	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0045	5621	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0046	5630	1	0	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0047	5630	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0048	5629	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0049	5629	1	0	0	0	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0050	5629	1	0	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0051	5629	1	0	0	0	1	0	copy fasta	MLXIP	chr12	122073756	122152344