JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MLXIP_chr12_122073756_122152344	0/0	t0052	5629	1	0	0	0	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0053	5629	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0054	5629	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0055	5621	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0056	5625	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0057	5629	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0058	5631	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0059	5628	1	0	0	0	0	1	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0060	5629	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0061	5629	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0062	5629	1	0	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	1/0	t0063	5631	1	0	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0064	5629	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0065	5628	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0066	5609	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0067	5609	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0068	5609	1	0	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0069	5608	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0070	5629	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0071	5629	1	0	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0072	5629	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0073	5631	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0074	5631	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0075	5631	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0076	5631	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0077	5619	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	t0078	5629	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLX_chr17_42562100_42578203	1/0	t0001	1626	235	67	43	88	8	28	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/1	t0002	1626	138	17	27	72	7	14	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	t0003	1626	11	0	1	5	0	5	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	t0004	1626	4	0	3	0	1	0	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	t0005	1604	4	4	0	0	0	0	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	t0006	1626	2	0	0	2	0	0	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	t0007	1626	1	0	0	1	0	0	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	t0008	1626	1	0	0	0	0	1	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	t0009	1604	1	1	0	0	0	0	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	t0010	1626	1	1	0	0	0	0	copy fasta	MLX	chr17	42562100	42578203
MLYCD_chr16_83894115_83932031	0/0	t0001	11573	30	1	4	15	3	7	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0002	11575	20	6	1	10	2	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0003	11579	19	2	5	7	0	5	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0004	11575	18	3	7	6	0	2	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0005	11573	16	0	0	16	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0006	11579	15	4	2	6	0	3	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0007	11573	13	0	0	13	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0008	11585	11	1	0	9	1	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0009	11575	9	0	6	2	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0010	11571	8	0	1	7	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0011	11581	7	0	2	5	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0012	11579	7	0	2	1	2	2	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	t0013	11428	6	0	0	6	0	0	copy fasta	MLYCD	chr16	83894115	83932031